Package: gosset 1.3-2

Kauê de Sousa

gosset: Tools for Data Analysis in Experimental Agriculture

Methods to analyse experimental agriculture data, from data synthesis to model selection and visualisation. The package is named after W.S. Gosset aka ‘Student’, a pioneer of modern statistics in small sample experimental design and analysis.

Authors:Kauê de Sousa [aut, cre], Jacob van Etten [aut], David Brown [aut], Jonathan Steinke [aut], Joost van Heerwaarden [aut]

gosset_1.3-2.tar.gz
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gosset.pdf |gosset.html✨
gosset/json (API)
NEWS

# Install 'gosset' in R:

install.packages('gosset', repos = c('https://agrdatasci.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/agrdatasci/gosset/issues

Datasets:

breadwheat - Preferred bread wheat varieties
kenyachoice - Kenyan farmers’ preferences for agricultural and livelihood practices
nicabean - Common bean on-farm trial in Nicaragua

On CRAN:

experimental-design rankings-data

23 exports 4 stars 1.54 score 101 dependencies 30 scripts 371 downloads

Last updated 5 days agofrom:49a9092f36. Checks:OK: 7. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Sep 13 2024
R-4.5-win	OK	Sep 13 2024
R-4.5-linux	OK	Sep 13 2024
R-4.4-win	OK	Sep 13 2024
R-4.4-mac	OK	Sep 13 2024
R-4.3-win	OK	Sep 13 2024
R-4.3-mac	OK	Sep 13 2024

Exports:akaike_weights btpermute compare crossvalidation kendallTau kendallW likelihood_ratio node_labels node_rules pairwise_probs pseudo_rank pseudoR2 rank_numeric rank_tricot regret reliability resample rowbind set_binomialfreq set_paircomp top_items worth_bar worth_map

Dependencies:askpass backports bit bit64 boot BradleyTerry2 brglm cellranger checkmate clarabel class cli colorspace cpp11 crayon curl CVXR data.table DescTools dplyr e1071 ECOSolveR Exact expm fansi farver Formula generics ggparty ggplot2 ggrepel gld glue gmp gtable gtools hms httr igraph inum isoband jsonlite labeling lattice libcoin lifecycle lme4 lmom magrittr MASS Matrix matrixStats mgcv mime minqa munsell mvtnorm nlme nloptr openssl osqp partykit patchwork pillar pkgconfig PlackettLuce prettyunits profileModel progress proxy psychotools psychotree purrr qvcalc R6 RColorBrewer Rcpp RcppEigen readxl rematch rlang Rmpfr rootSolve rpart RSpectra rstudioapi sandwich scales scs stringi stringr survival sys tibble tidyr tidyselect utf8 vctrs viridisLite withr zoo

Trait prioritization and crop performance with decentralized on-farm trial data

Kauê de Sousa, David Brown, Jacob van Etten

Rendered fromvignette-1-trait-prioritization-and-crop-performance.Rmdusingknitr::rmarkdown_notangleon Sep 13 2024.

Last update: 2024-04-25
Started: 2024-04-25

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Akaike weights	akaike_weights
Likelihood-ratio test	anova.PlackettLuce likelihood_ratio
Preferred bread wheat varieties	breadwheat
Variable selection with Permuted Inclusion Criterion	btpermute
Compare agreement between two methods	compare compare.default compare.PlackettLuce
Cross-validation	AIC.bttree AIC.gnm crossvalidation deviance.bttree deviance.gnm deviance.pltree
Tools for Data Analysis in Experimental Agriculture	gosset-package gosset
Kendall rank correlation coefficient	kendallTau kendallTau.default kendallTau.grouped_rankings kendallTau.matrix kendallTau.paircomp kendallTau.rankings
Kendall's W (coefficient of concordance)	kendallW kendallW.default kendallW.pltree
Kenyan farmers’ preferences for agricultural and livelihood practices	kenyachoice
Common bean on-farm trial in Nicaragua	nicabean
Get node labels and rules used in a party tree	node_labels node_rules plot.pltree top_items
Compute pairwise probabilities	pairwise_probs
Add pseudo-rank to missing values	pseudo_rank
Pseudo R-squared	pseudoR2 pseudoR2.bttree pseudoR2.default pseudoR2.pltree
Plackett-Luce rankings from numeric values	rank_numeric
Build Plackett-Luce rankings from tricot dataset	rank_tricot
Regret-based values for risk assessment	regret regret.default regret.list regret.pltree
Probability of outperforming a check	reliability reliability.default reliability.PlackettLuce reliability.pltree
Re-sample model estimates	resample
Combine R objects by rows	rowbind rowbind.default rowbind.list
Binomial frequency rankings from pairwise contests	set_binomialfreq
Pairwise comparison rankings	set_paircomp
Plot worth parameters	worth_bar worth_map worth_map.default worth_map.list